Species	Tissue	CellType	Marker	Resource
Mouse	Mammary gland	Alternatively activated macrophage	Ccl6, Folr2, Retnla	32785175
Mouse	Mammary gland	B cell	Cd79a, Ms4a1, Cd19, Cd74, Cd79b, Fcmr, Igh, Igk, Igkc, Igl	30283141, 29474909, 35260564, 32785175, 32479261, 33988830, 34023861, 33378681, 33072601, 34879282
Mouse	Mammary gland	Basal cell	Krt14, Krt5, Acta2, Cd44, Etv5, Gng11, Igfbp4, Itgb1, Krt17, Krt4, Pdpn, Procr, Zeb2	34815798, 30283141, 34023861, 30089273, 23251482, 29225342
Mouse	Mammary gland	CD4-positive, alpha-beta T cell	Cd4, Ctla4, Cxcr6, Icos, S100a4	29474909, 33378681
Mouse	Mammary gland	CD8-positive, alpha-beta T cell	Cd8a, Cd8b1, Cd3g, Ctla2a, Dapl1, Il2rb, Rps6	29474909, 33378681
Mouse	Mammary gland	Central memory CD4-positive, alpha-beta T cell	Cd69	35442423
Mouse	Mammary gland	Dendritic cell	Cd209a, Siglech, Basp1, Ccl22, Ear2, Flt3, H2-DMb1, H2-Eb1, Naaa, Napsa, Traf1, Xcr1	29474909, 35260564, 32785175, 32479261, 33378681
Mouse	Mammary gland	Dermal dendritic cell	Cd14, Clec4e	32785175
Mouse	Mammary gland	Endothelial cell	Pecam1, Cdh5, Adgrl4, Egfl7, Emcn, Esam, Fabp4, Kdr, Ptprb	34815798, 30283141, 35300413, 34023861, 31288631
Mouse	Mammary gland	Endothelial cell of lymphatic vessel	Ccl21a, Flt4, Mmrn1, Prox1	33378681
Mouse	Mammary gland	Endothelial cell of vascular tree	Sele, Sox17	33378681
Mouse	Mammary gland	Epithelial cell	Epcam, Krt14, Krt18, Ly6d, Csn3, Esr1, Krt5, Krt8, Pgr, Tcp1	34815798, 35300413, 33378681, 34879282, 12359051, 29187227
Mouse	Mammary gland	Erythrocyte	Jchain, Prg2	34023861
Mouse	Mammary gland	Fat cell	Fabp4, Adipoq, Cd36, Clu, Gpihbp1, Mfge8, Plin1	29474909, 35300413, 33988830
Mouse	Mammary gland	Fibroblast	Col1a1, Col1a2, Pdgfra, Vim, Acta2, Anxa3, Col3a1, Col5a1, Dcn, Ddr2, Dpp4, Fbln1, Fn1, Igfbp5, Jun, Klf2, Loxl1, Lum, Pi16, Rgcc, Rgs5, Timp2, Tnfaip6	34815798, 35300413, 32785175, 33988830, 34023861, 33378681, 31288631, 34879282
Mouse	Mammary gland	Hormone-sensing mammary epithelial cell	Cited1, Esr1, Pgr, Prlr, S100a6	29225342
Mouse	Mammary gland	Hormone-sensing mammary epithelial cell progenitor cell	Aldh1a3, Cd14, Cited1, Esr1, Kit, Pgr, Prlr, S100a6	29225342
Mouse	Mammary gland	Luminal cell	Krt18, Krt8, Krt19, Csn3, Esr1, Pgr, Prlr, Cited1, Egfr, Elf5, Epcam, Erbb2, Erbb3, Erbb4, Fgg, Gata3, Ltf, Mfge8, Prom1, Ptn, Trf, Wfdc18	34815798, 30283141, 29474909, 32479261, 34023861, 33378681
Mouse	Mammary gland	Macrophage	Cd14, Cd68, C1qb, Cd163, Csf1r, Retnla, Adgre1, C1qa, C1qc, Cd209f, Cd74, Fpr1, Mafb, Pf4, Retnlg, S100a8, S100a9, Trem1, Wfdc21	30283141, 29474909, 35260564, 32785175, 32479261, 33988830, 34023861
Mouse	Mammary gland	Mammary alveolar cell	Csn3, Csn1s1, Csn2, Glycam1, Krt18, Lalba, Wap, Wfdc18	29474909, 35583996
Mouse	Mammary gland	Mature dendritic cell	Apol7c, Ccl22, Fscn1, H2-M2, Tmem123	29474909
Mouse	Mammary gland	Mature luminal cell	Krt8, Ly6a	30089273
Mouse	Mammary gland	Memory B cell	Bank1, Cd79a, Cd79b, Ebf1, Ms4a1	34023861
Mouse	Mammary gland	Memory T cell	Cd3d, Crem, Lef1	32785175
Mouse	Mammary gland	Monocyte	Cd14, Cd68, Retnla, Tnip3, Ccrl2, Il1b, Il1rn, Ly6c2, Ly6i, S100a8	29474909, 32785175, 32479261
Mouse	Mammary gland	Myoepithelial cell	Acta2, Krt14, Krt4, Krt5, Myl9, Mylk, Oxtr, Etv5, Krt17, Myh11, Pdpn	29474909, 35583996, 33378681, 29225342
Mouse	Mammary gland	Naive B cell	Bank1, Cd79a, Cd79b, Ebf1, Ms4a1	34023861
Mouse	Mammary gland	Naive T cell	Cd3d, Lef1, Sell	32785175
Mouse	Mammary gland	Naive thymus-derived CD4-positive, alpha-beta T cell	Ccr7, Lef1, Sell	35442423
Mouse	Mammary gland	Natural killer cell	Gzma, Ncr1, Nkg7, Ccl5, Itgae, Klra4, Klra7, Klra8, Klra9, Klrc1, Klre1, Klrk1, Xcl1	29474909, 35260564, 32785175, 32479261, 33378681
Mouse	Mammary gland	Neutrophil	Csf3r	35260564
Mouse	Mammary gland	Pericyte	Cspg4, Des, Notch3, Rgs5	35300413, 33378681
Mouse	Mammary gland	Pneumocyte	Csn2, Glycam1, Lalba, Wap	29225342
Mouse	Mammary gland	Progenitor cell	Kit, Aldh1a3, Cd14, Csn2, Krt14, Krt8, Ly6a, Cd24a, Csn1s1, Elf5, Glycam1, Itga6, Krt17, Krt18, Krt19, Krt5, Lalba, Ltf, Spp1, Tcp1, Wap	30283141, 29474909, 35583996, 26432258, 23000969, 21765473, 21132007, 21109936, 17227796, 29225342
Mouse	Mammary gland	Quiescent mammary stem cell	Inpp5d, Procr	29666189
Mouse	Mammary gland	Smooth muscle cell	Apoe, Chil1, Cnn1, Epcam, Gjb4, Krt14, Krt17, Lcn2, Plet1, Sfn, Slpi, Tagln	31288631, 34411694
Mouse	Mammary gland	Stem cell	Cd24a, Itgb1, Itga6, Aldh1a3, Cd44, Gng11, Igfbp4, Ly6a, Nanog, Pou5f1, Procr, Sox2, Zeb2	35583996, 34023861, 29620414, 23947835, 23159610, 22581339, 16456652, 16397499
Mouse	Mammary gland	Stromal cell	Vim, S100a4, Fn1, Pparg, Tnfrsf9	30283141, 34023861
Mouse	Mammary gland	T cell	Cd3e, Cd8b1, Cd4, Cd247, Cd3d, Cd3g, Cd8a, Cxcr6, Gzma, Ifi206, Ifit1, Ifit3, Isg15, Isg20, Klrk1	30283141, 29474909, 35260564, 32479261, 34023861, 33072601, 34879282
Mouse	Mammary gland	Tumor-associated macrophage	Adgre1, Cd68	35442423
Mouse	Mammary gland	Type II pneumocyte	Cd14, Csn3, Krt8	30089273